A guide to the twenty common amino acids

Have you ever thought about what makes up your body? Only 20 amino acids! Take a look at the graphic below, to discover the structure of each of these, plus information on the notation used to represent them.

Source: Compound Interest. Click to enlarge.

Amino acids are organic compounds containing amine (-NH2) and carboxyl (-COOH) functional groups, along with a side chain (R group) specific to each amino acid. The key elements of an amino acid are carbon, hydrogen, oxygen, and nitrogen, although other elements are found in the side chains of certain amino acids. About 500 amino acids are known and can be classified in many ways. They can be classified according to the core structural functional groups' locations as alpha- (α-), beta- (β-), gamma- (γ-) or delta- (δ-) amino acids; other categories relate to polarity, pH level, and side chain group type (aliphatic, acyclic, aromatic, containing hydroxyl or sulfur, etc.). In the form of proteins, amino acid residues form the second-largest component (water is the largest) of human muscles and other tissues. Beyond their role as residues in proteins, amino acids participate in a number of processes such as neurotransmitter transport and biosynthesis.

In biochemistry, amino acids having both the amine and the carboxylic acid groups attached to the first (alpha-) carbon atom have particular importance. They are known as 2-, alpha-, or α-amino acids (generic formula H2NCHRCOOH in most cases, where R is an organic substituent known as a "side chain"); often the term "amino acid" is used to refer specifically to these. They include the 22 proteinogenic ("protein-building") amino acids, which combine into peptide chains ("polypeptides") to form the building-blocks of a vast array of proteins. These are all L-stereoisomers ("left-handed" isomers), although a few D-amino acids ("right-handed") occur in bacterial envelopes, as a neuromodulator (D-serine), and in some antibiotics. 

Twenty of the proteinogenic amino acids are encoded directly by triplet codons in the genetic code and are known as "standard" amino acids. The other two ("non-standard" or "non-canonical") are selenocysteine (present in many noneukaryotes as well as most eukaryotes, but not coded directly by DNA), and pyrrolysine (found only in some archea and one bacterium). Pyrrolysine and selenocysteine are encoded via variant codons; for example, selenocysteine is encoded by stop codon and SECIS element. N-formylmethionine (which is often the initial amino acid of proteins in bacteria, mitochondria, and chloroplasts) is generally considered as a form of methionine rather than as a separate proteinogenic amino acid. Codon–tRNA combinations not found in nature can also be used to "expand" the genetic code and create novel proteins known as alloproteins incorporating non-proteinogenic amino acids.

Many important proteinogenic and non-proteinogenic amino acids have biological functions. For example, in the human brain, glutamate (standard glutamic acid) and gamma-amino-butyric acid ("GABA", non-standard gamma-amino acid) are, respectively, the main excitatory and inhibitory neurotransmitters. Hydroxyproline, a major component of the connective tissue collagen, is synthesised from proline. Glycine is a biosynthetic precursor to porphyrins used in red blood cells. Carnitine is used in lipid transport.

Nine proteinogenic amino acids are called "essential" for humans because they cannot be created from other compounds by the human body and so must be taken in as food. Others may be conditionally essential for certain ages or medical conditions. Essential amino acids may also differ between species.

Because of their biological significance, amino acids are important in nutrition and are commonly used in nutritional supplements, fertilizers, and food technology. Industrial uses include the production of drugs, biodegradable plastics, and chiral catalysts.

For more information visit:-

http://www.compoundchem.com/2014/09/16/aminoacids/

https://en.wikipedia.org/wiki/Amino_acid

http://www.prlabs.co.uk/lab-supplies.php?N=l-arginine-for-biochemistry&Id=22533

On this day in science history: polyethylene was discovered

Polyethylene was first synthesized by the German chemist Hans von Pechmann, who prepared it by accident in 1898 while investigating diazomethane. When his colleagues Eugen Bamberger and Friedrich Tschirner characterized the white, waxy substance that he had created, they recognized that it contained long –CH2– chains and termed it polymethylene.

Polythylene balls, by Lluis tgn (Own work) [CC BY-SA 3.0 (http://creativecommons.org/licenses/by-sa/3.0) or GFDL (http://www.gnu.org/copyleft/fdl.html)], via Wikimedia Commons

The first industrially practical polyethylene synthesis (diazomethane is a notoriously unstable substance that is generally avoided in industrial application) was discovered in 1933 by Eric Fawcett and Reginald Gibson, again by accident, at the Imperial Chemical Industries (ICI) works in Northwich, England.  Upon applying extremely high pressure (several hundred atmospheres) to a mixture of ethylene and benzaldehyde they again produced a white, waxy material. Because the reaction had been initiated by trace oxygen contamination in their apparatus, the experiment was, at first, difficult to reproduce. It was not until 1935 that another ICI chemist, Michael Perrin, developed this accident into a reproducible high-pressure synthesis for polyethylene that became the basis for industrial LDPE production beginning in 1939. Because polyethylene was found to have very low-loss properties at very high frequency radio waves, commercial distribution in Britain was suspended on the outbreak of World War II, secrecy imposed, and the new process was used to produce insulation for UHF and SHF coaxial cables of radar sets. During World War II, further research was done on the ICI process and in 1944 Bakelite Corporation at Sabine, Texas, and Du Pont at Charleston, West Virginia, began large-scale commercial production under license from ICI.

The breakthrough landmark in the commercial production of polyethylene began with the development of catalyst that promote the polymerization at mild temperatures and pressures. The first of these was a chromium trioxide–based catalyst discovered in 1951 by Robert Banks and J. Paul Hogan at Phillips Petroleum. In 1953 the German chemist Karl Ziegler developed a catalytic system based on titanium halides and organoaluminium compounds that worked at even milder conditions than the Phillips catalyst. The Phillips catalyst is less expensive and easier to work with, however, and both methods are heavily used industrially. By the end of the 1950s both the Phillips- and Ziegler-type catalysts were being used for HDPE production. In the 1970s, the Ziegler system was improved by the incorporation of magnesium chloride. Catalytic systems based on soluble catalysts, the metallocenes, were reported in 1976 by Walter Kaminsky and Hansjörg Sinn. The Ziegler- and metallocene-based catalysts families have proven to be very flexible at copolymerizing ethylene with other olefins and have become the basis for the wide range of polyethylene resins available today, including very low density polyethylene and linear low-density polyethylene. Such resins, in the form of UHMWPE fibers, have (as of 2005) begun to replace aramids in many high-strength applications.

One of the main problems of polyethylene is that without special treatment it's not readily biodegradable, and thus accumulates. In Japan, getting rid of plastics in an environmentally friendly way was the major problem discussed until the Fukushima disaster in 2011. It was listed as a $90 billion market for solutions. Since 2008, Japan has rapidly increased the recycling of plastics, but still has a large amount of plastic wrapping which goes to waste.

In May 2008, Daniel Burd, a 16-year-old Canadian, won the Canada-Wide Science Fair in Ottawa after discovering that Pseudomonas fluorescens, with the help of Sphingomonas, can degrade over 40% of the weight of plastic bags in less than three months.

The thermophilic bacterium Brevibacillus borstelensis (strain 707) was isolated from a soil sample and found to use low-density polyethylene as a sole carbon source when incubated together at 50°C. Biodegradation increased with time exposed to ultraviolet radiation.

In 2010, a Japanese researcher, Akinori Ito, released the prototype of a machine which creates oil from polyethylene using a small, self-contained vapor distillation process.

In 2014, a Chinese researcher discovered that Indian mealmoth larvae could metabolize polyethylene from observing that plastic bags at his home had small holes in them. Deducing that the hungry larvae must have digested the plastic somehow, he and his team analyzed their gut bacteria and found a few that could use plastic as their only carbon source. Not only could the bacteria from the guts of the Plodia interpunctella moth larvae metabolize polyethylene, they degraded it significantly, dropping its tensile strength by 50%, its mass by 10% and the molecular weights of its polymeric chains by 13%.

For more information visit:-

https://todayinsci.com/3/3_27.htm

https://en.wikipedia.org/wiki/Polyethylene

http://www.prlabs.co.uk/lab-supplies.php?N=ethylene-oxide-monitor&Id=41684

Laboratory Plasticware-Physical properties and chemical resistance

The link below is a table showing the physical properties and chemical resistance of plastics including its care and maintenance. Click here.